Just got a new virtual machine running on FMF's servers installed.
Some data from Feri:
med0.ipv6.fmf.uni-lj.si
u: xxxxxxx
p: xxxxxxx
Ta uporabnik ima polne sudo pravice.
Trenutno ipv6 naslov ni dostopen iz Interneta, samo iz FMF omrezja.
Za virtualko je skonfiguriran reverse proxy (na …While FFT is adopted in ROOT, it is sometimes tedious to interpret the results of the transformation. To faciliate the procedure I invested some time in creating an independent FFTdata_ROOT class which handles the data and transformation of a real valued function given as histogram.
The package …
read moreTo program the FPGA you should open Impact:
shell
#>~/scripts/run_impact.sh
and you will have a chain like the one in the picture
with the device xcf16p (flash) loaded with the firmware and the second device bypassed.
The in the programming properties window you should select …
read more/data0/studen/software/install/gdcm/bin/gdcmraw -i /data0/studen/data/merlin/PET\ harmonization/@files/KNM\ UKCL/2015_07_22_Jaszczak/PET-RAW-DATA/HARMONIZATION1.PT.PET_WHOLEBODY_ULTRAHD_\(ADULT\).0602.2001.2015.07.22.12.38.03.265625.199053758.IMA -t 7fe1,1010 -o temp/interfile_data.hs
/data0/studen/software/install …observer_tools softwareThe package observer_tools is intended for analysis and reconstruction of probe data. The package is pretty disorganized in its current versions as it was heavily modified to suit particular goals that came about during reconstruction.
The package consists of three modules:
observer module. This module contains …For SNR one needs to determine the expected data projection
$$\bar{Y}=M\lambda$$
where $\lambda$ is the true object (digital reference object, say)
and M is the system matrix. Moreover, one needs the average
reconstructed image $\check{\lambda}$ which is the reconstruction of
$\bar …
In Neuro Oncol (2015) 17 (6): 784-800. doi:10.1093/neuonc/nou322
Apart from the described biological ambiguities of ADC changes, methodical concerns such as standardization of measurement parameters, artifact minimization, and improvement of spatial resolution still remain unresolved.
Quantitative Imaging Biomarkers Alliance published …
read moreParse the data using observer and decoderSiSparse. Typical
configuration file processSi257.config looks like this:
#run with decoderSiSparse
files=/storage/data/20161206/si/Am241_si257_thr180_adj3_
eventsDotOut=/storage/data/20161206/si/out/Am241_si257_thr180_adj3.out
nPedestal=10000
configFile=/storage/data/imageRec/layout/setupOSU/setup257.in
The configuration file setup257 …
read moreRead the README file. All neccesarry additional software:
The file user-packages-10Dec2016.xml containing a snapshot of installed Suse11.4 packages.
Start from a DVD disk. Make a …
read moreRun
vmedaq ~/.vmedaq/bgo_ring.xml
Set coincidence module to OR. Make sure the GATE width is long enough for
peak of the signal to be recorded. Store data into flood directory
Command is
bin/decoderBgoFloodNoFPGA …