A backup of all data (database + files) (~/scripts/backup.sh):
tar cvzf /mnt/disk/merlin/data0.tgz /data0 [92G]
A backup of software: tomcat8, labkey, apache:
tar cvzf /mnt/disk/merlin/tomcat8.tgz /usr/share/tomcat8 [21M]
tar cvzf /mnt/disk/merlin/tomcat8_catalina.tgz /var/lib/tomcat8 [7.5M …execPSFroot [0] .x loadLibs_rodMeasurement.C
root [1] va_data va;
root [2] va.parse("/data0/studen/data/imageRec/studies/general/match_harmonized/Fischer_final.cfg")
root [] TH2D h2;
root [] getImage(h2,va,0);
The long way
root [6] va.img.set_value<int>("dirlistnData",100000,0)
root …Most of the software is obtained through git. In most cases, I use the latest version, although switching to older is also possible. Building root takes a while.
gamma@linux-nakn:~> cd /data/software/src/
#install cmake if neccesary
gamma@linux-nakn:/data/software/build/root> sudo zypper install cmake …Install dependencies
gamma@linux-nakn:~> sudo zypper install kernel-devel git autoconf \
libtool python-devel python3-devel zlib-devel gtk2-devel \
python-gtk-devel gtk-doc libxml2-devel libglade2-devel mlocate
make automake gcc pkg-config
The SIS1100 driver:
gamma@linux-nakn:~>cd /data/software/packages
gamma@linux-nakn:/data/software/packages> wget http://www.struck.de/sis1100-2 …Following instructions on Sling:
apt-get install nordugrid-arc-client nordugrid-arc-plugins-globus
Then update list of metapackets by updating /etc/apt/sources.list and get the
certificates:
wget -q -O - https://dist.eugridpma.info/distribution/igtf/current/GPG-KEY-EUGridPMA-RPM-3 | sudo apt-key add -
Update the apt cache, including the new …
read moreWhat is a gene? It is supposed to be a unit of hereditary information. Hence, a gene for blue eyes. Now, everyone knows genes are packed into a deoxy-nucleotide acid (DNA for short), with the full assembly of my DNA packed into 23 (that is, if you are lucky …
read moreTo add new ways to import data from different file types (say, dicom files), a new module should be made. Labkey is quite verbose on module insertion. Here they elaborate what modules can do. In the list is the pointer to a pipeline based on R scripts. While …
read moreMerlin is the name of the PC that will run labkey. It can be accessed via:
username@merlin.fmf.uni-lj.si
Contact me if you want to have a username, however a valid reason should be specified.
The ownership status of merlin is somewhat mixed. It belongs to …
read more~/software/build/gate\_tools/cpp
makePhantomConfig
~/software/build/gate\_tools/config\_files/phantom{,2}\_{pc,grid}.cfg
~/software/build/Gate/umSetup/scripts
For projects (uniform, edge) use:
generateProject.sh
For phantom use
generatePhantom.sh …